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Publications

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Author Title Type [ Year(Asc)]
2016
Bollmann S, Fang Y, Press C, Tyler BMerrick, Grünwald NJ. Diverse evolutionary trajectories for small RNA biogenesis genes in the oomycete genus Phytophthora [Internet]. Frontiers in Plant Science 2016;7Available from: http://www.frontiersin.org/plant_biotic_interactions/10.3389/fpls.2016.00284/abstract
Grünwald NJ, Larsen MM, Kamvar ZN, Reeser PW, Kanaskie A, Laine J, Wiese R. First report of the EU1 clonal lineage of Phytophthora ramorum on tanoak in an Oregon Forest. PLANT DISEASE 2016;100:1024.
Davis EW, Weisberg AJ, Tabima JF, Grünwald NJ, Chang JH. Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria [Internet]. PeerJ 2016;4:e2222.Available from: https://doi.org/10.7717/peerj.2222
Biasi A, Martin FN, Cacciola SO, di San Lio GMagnano, Grünwald NJ, Schena L. Genetic analysis of Phytophthora nicotianae populations from different hosts using microsatellite markers [Internet]. Phytopathology 2016;06:1006-1014.Available from: http://dx.doi.org/10.1094/PHYTO-11-15-0299-R
Hansen ZR, Everts KL, Fry WE, Gevens AJ, Grünwald NJ, Gugino BK, Johnson DA, Johnson SB, Judelson HS, Knaus BJ, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor GA, Smart CD. Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology [Internet]. PLOS ONE 2016;11:1-22.Available from: http://dx.doi.org/10.1371%2Fjournal.pone.0165690
Knaus BJ, Tabima JF, Davis CE, Judelson HS, Grünwald NJ. Genomic Analyses of Dominant US Clonal Lineages of Phytophthora infestans Reveals a Shared Common Ancestry for Clonal Lineages US11 and US18 and a Lack of Recently Shared Ancestry Among All Other US Lineages [Internet]. Phytopathology 2016;:PHYTO–10.Available from: http://dx.doi.org/10.1094/PHYTO-10-15-0279-R
Kasuga T, Bui M, Bernhardt E, Swiecki T, Aram K, Cano LM, Webber J, Brasier C, Press C, Grünwald NJ, Rizzo DM, Garbelotto M. Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum [Internet]. BMC Genomics 2016;17:1–17.Available from: http://dx.doi.org/10.1186/s12864-016-2717-z
Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD. Loop-Mediated Isothermal Amplification (LAMP) for Detection of the Tomato and Potato Late Blight Pathogen, Phytophthora infestans. Journal of applied microbiology 2016;
Foster ZSL, Sharpton T, Grünwald NJ. MetacodeR: An R package for manipulation and heat tree visualization of community taxonomic data from metabarcoding [Internet]. bioRxiv 2016;:071019.Available from: https://doi.org/10.1101/071019
Tabima JF, Everhart SE, Larsen MM, Weisberg AJ, Kamvar ZN, Tancos MA, Smart CD, Chang JH, Grünwald NJ. Microbe-ID: an open source toolbox for microbial genotyping and species identification [Internet]. PeerJ 2016;4:e2279.Available from: https://doi.org/10.7717/peerj.2279
Grünwald NJ, McDonald BA, Milgroom MG. Population Genomics of Fungal and Oomycete Pathogens [Internet]. Annual Review of Phytopathology 2016;54:323–46.Available from: http://dx.doi.org/10.1146/annurev-phyto-080614-115913
Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD. SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis [Internet]. Plant Disease 2016;100:1297–1306.Available from: http://dx.doi.org/10.1094/PDIS-11-15-1247-RE

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