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Publications: Journal articles


Knaus, Brian J, and Niklaus J Grünwald. Vcfr: A Package To Manipulate And Visualize Variant Call Format Data In R. Molecular Ecology Resources 17 (2017): 44–53. doi:10.1111/1755-0998.12549.


Hansen, Zachariah R, Brian J Knaus, Javier F Tabima, Caroline M Press, Howard S Judelson, Niklaus J Grünwald, and Christine D Smart. Snp-Based Differentiation Of Phytophthora Infestans Clonal Lineages Using Locked Nucleic Acid Probes And High-Resolution Melt Analysis. Plant Disease 100 (2016): 1297–1306. doi:10.1094/PDIS-11-15-1247-RE.
Hansen, Zachariah R, Kathryne L Everts, William E Fry, Amanda J Gevens, Niklaus J Grünwald, Beth K Gugino, Dennis A Johnson, et al.. Genetic Variation Within Clonal Lineages Of Phytophthora Infestans Revealed Through Genotyping-By-Sequencing, And Implications For Late Blight Epidemiology. Plos One 11 (2016): 1-22. doi:10.1371/journal.pone.0165690.
Biasi, Antonio , Frank N Martin, Santa O Cacciola, Gaetano Magnano di San Lio, Niklaus J Grünwald, and Leonardo Schena. Genetic Analysis Of Phytophthora Nicotianae Populations From Different Hosts Using Microsatellite Markers. Phytopathology 06 (2016): 1006-1014. doi:10.1094/PHYTO-11-15-0299-R.
Davis, Edward W, Alexandra J Weisberg, Javier F Tabima, Niklaus J Grünwald, and Jeff H Chang. Gall-Id: Tools For Genotyping Gall-Causing Phytopathogenic Bacteria. Peerj 4 (2016): e2222. doi:10.7717/peerj.2222.
Tabima, Javier F, Sydney E Everhart, Meredith M Larsen, Alexandra J Weisberg, Zhian N Kamvar, Matthew A Tancos, Christine D Smart, Jeff H Chang, and Niklaus J Grünwald. Microbe-Id: An Open Source Toolbox For Microbial Genotyping And Species Identification. Peerj 4 (2016): e2279. doi:10.7717/peerj.2279.
Grünwald, Niklaus J, Bruce A McDonald, and Michael G Milgroom. Population Genomics Of Fungal And Oomycete Pathogens. Annual Review Of Phytopathology 54 (2016): 323–46. doi:10.1146/annurev-phyto-080614-115913.
Knaus, Brian J, and Niklaus J Grünwald. Vcfr: An R Package To Manipulate And Visualize Vcf Format Data. Biorxiv (2016). doi:10.1111/1755-0998.12549.