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Publications: Journal articles


Knaus, Brian J, and Niklaus J Grünwald. Inferring Variation In Copy Number Using High Throughput Sequencing Data In R. Frontiers In Genetics 9 (2018): 123. doi:10.3389/fgene.2018.00123.
LeBoldus, JM , KL Sondreli, W Sutton, P Reeser, S Navarro, A Kanaskie, and NJ Grünwald. First Report Of Phytophthora Ramorum Lineage Eu1 Infecting Douglas Fir And Grand Fir In Oregon. Plant Disease 102 (2018): 455-455.
Foster, ZSL , S Chamberlain, and NJ Grünwald. Taxa: An R Package Implementing Data Standards And Methods For Taxonomic Data [Version 1; Referees: Awaiting Peer Review]. F1000Research 7 (2018). doi:10.12688/f1000research.14013.1.


Savory, Elizabeth A, Skylar L Fuller, Alexandra J Weisberg, William J Thomas, Michael I Gordon, Danielle M Stevens, Allison L Creason, et al. Evolutionary Transitions Between Beneficial And Phytopathogenic Rhodococcus Challenge Disease Management. Elife 6 (2017): e30925. doi:10.7554/eLife.30925.
Grünwald, Niklaus J, Sydney Everhart, Brian J Knaus, and Zhian N Kamvar. Best Practices For Population Genetic Analyses. Phytopathology 107 (2017): 1000-1010. doi:10.1094/PHYTO-12-16-0425-RVW.
Tabima, Javier , Brent Kronmiller, Caroline Press, Brett Tyler, Inga Zasada, and Niklaus Grünwald. Whole Genome Sequences Of The Raspberry And Strawberry Pathogens Phytophthora Rubi And P. Fragariae. Biorxiv (2017): 115824. doi:10.1101/115824.
Wang, Jianan , Sylvia P Fernández-Pavía, Meredith M Larsen, Edith Garay-Serrano, Rosario Gregorio-Cipriano, Gerardo Rodríguez-Alvarado, Niklaus J Grünwald, and Erica M Goss. High Levels Of Diversity And Population Structure In The Potato Late Blight Pathogen At The Mexico Centre Of Origin. Molecular Ecology 26 (2017): 1091–1107. doi:10.1111/mec.14000.
Foster, Zachary SL, Thomas J Sharpton, and Niklaus J Grünwald. Metacoder: An R Package For Visualization And Manipulation Of Community Taxonomic Diversity Data. Plos Computational Biology 13 (2017): 1-15. doi:10.1371/journal.pcbi.1005404.
Paradis, Emmanuel , Thierry Gosselin, Niklaus J Grünwald, Thibaut Jombart, Stéphanie Manel, and Hilmar Lapp. Towards An Integrated Ecosystem Of R Packages For The Analysis Of Population Genetic Data. Molecular Ecology Resources 17 (2017): 1–4. doi:10.1111/1755-0998.12636.
Kamvar, Zhian N, Margarita M López-Uribe, Simone Coughlan, Niklaus J Grünwald, Hilmar Lapp, and Stéphanie Manel. Developing Educational Resources For Population Genetics In R: An Open And Collaborative Approach. Molecular Ecology Resources 17 (2017): 120–128. doi:10.1111/1755-0998.12558.